Transcript: ENST00000540819.1 PRKDC-005

Description

protein kinase, DNA-activated, catalytic polypeptide [Source:HGNC Symbol;Acc:9413]

Gene Synonyms

DNA-PKcs, DNAPK, DNPK1, HYRC, HYRC1, XRCC7, p350

Location

Chromosome 8: 48,866,910-48,871,869 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 2 domains and features, is associated with 2745 variant alleles and maps to 121 oligo probes.

Gene

This transcript is a product of gene ENSG00000253729.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq	Flags
ENST00000314191.2	PRKDC-201	13506	4127aa	ENSP00000313420.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F5GX40 P78527	NM_006904.6	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000338368.3	PRKDC-202	13413	4096aa	ENSP00000345182.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7EUY0 F5GX40	NM_001081640.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000536429.1	PRKDC-010	659	90aa	ENSP00000442177.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000540819.1	PRKDC-005	537	70aa	ENSP00000441157.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F5GX40	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000523565.1	PRKDC-002	13508	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000518216.1	PRKDC-001	12783	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000521331.1	PRKDC-004	1087	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000536483.1	PRKDC-011	834	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000541488.1	PRKDC-003	719	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000546304.1	PRKDC-007	589	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000432581.2	PRKDC-008	583	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000536710.1	PRKDC-009	554	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000535375.1	PRKDC-006	464	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-

Summary

Statistics

Exons: 5, Coding exons: 3, Transcript length: 537 bps, Translation length: 70 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000540819.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000397421 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000540819.1 PRKDC-005

Summary