Transcript: ENST00000355832.5 ERCC6-001

Description

excision repair cross-complementing rodent repair deficiency, complementation group 6 [Source:HGNC Symbol;Acc:3438]

Gene Synonyms

ARMD5, CKN2, COFS, COFS1, CSB, RAD26, UVSS1

Location

About this transcript

This transcript has 21 exons, is annotated with 22 domains and features, is associated with 35617 variant alleles and maps to 943 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000355832.5	ERCC6-001	8008	1493aa	ENSP00000348089.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7229	D6R9X7 F5H493 Q03468	NM_000124.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000542458.1	ERCC6-201	2932	863aa	ENSP00000445134.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H493	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000462247.1	ERCC6-005	660	179aa	ENSP00000422827.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6R9X7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000465653.1	ERCC6-002	733	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000475116.1	ERCC6-003	424	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000479652.1	ERCC6-004	418	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 21, Coding exons: 20, Transcript length: 8,008 bps, Translation length: 1,493 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q03468

CCDS

This transcript is a member of the Human CCDS set: CCDS7229

Version

ENST00000355832.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000047990 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.