Transcript: ENST00000504669.1 ITGA1-003

Description

integrin, alpha 1 [Source:HGNC Symbol;Acc:6134]

Gene Synonyms

CD49a, VLA1

Location

About this transcript

This transcript has 18 exons, is associated with 23271 variant alleles and maps to 474 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000282588.6	ITGA1-001	10757	1179aa	ENSP00000282588.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3955	P56199	NM_181501.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000504086.1	ITGA1-002	1366	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000513737.1	ITGA1-005	601	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000514262.1	ITGA1-006	556	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000509049.1	ITGA1-007	437	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000506275.1	ITGA1-004	7461	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000504669.1	ITGA1-003	6276	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 18, Coding exons: 0, Transcript length: 6,276 bps,

Version

ENST00000504669.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000367726 (version 1)