Transcript: ENST00000282588.6 ITGA1-001

Description

integrin, alpha 1 [Source:HGNC Symbol;Acc:6134]

Gene Synonyms

CD49a, VLA1

Location

About this transcript

This transcript has 29 exons, is annotated with 45 domains and features, is associated with 73460 variant alleles and maps to 1134 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000282588.6	ITGA1-001	10757	1179aa	ENSP00000282588.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3955	P56199	NM_181501.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000504086.1	ITGA1-002	1366	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000513737.1	ITGA1-005	601	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000514262.1	ITGA1-006	556	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000509049.1	ITGA1-007	437	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000506275.1	ITGA1-004	7461	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000504669.1	ITGA1-003	6276	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 29, Coding exons: 29, Transcript length: 10,757 bps, Translation length: 1,179 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P56199

CCDS

This transcript is a member of the Human CCDS set: CCDS3955

Version

ENST00000282588.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000253855 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.