Transcript: ENST00000514765.2 SLCO6A1-006

Description

solute carrier organic anion transporter family, member 6A1 [Source:HGNC Symbol;Acc:23613]

Gene Synonyms

CT48, GST, MGC26949, OATP-I, OATP6A1, OATPY, SLC21A19

Location

Chromosome 5: 101,707,649-101,726,933 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 8638 variant alleles and maps to 175 oligo probes.

Gene

This transcript is a product of gene ENSG00000205359.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000506729.1	SLCO6A1-001	2689	719aa	ENSP00000421339.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34206	D3DSZ4 H0Y8R6 Q86UG4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000379807.3	SLCO6A1-002	2437	719aa	ENSP00000369135.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34206	D3DSZ4 H0Y8R6 Q86UG4	NM_173488.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000389019.3	SLCO6A1-003	2340	657aa	ENSP00000373671.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D3DSZ4 H0Y8R6 Q86UG4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000379810.1	SLCO6A1-201	1762	466aa	ENSP00000369138.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J020 H0Y8R6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000513675.1	SLCO6A1-004	1611	466aa	ENSP00000421990.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J020 H0Y8R6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000511588.1	SLCO6A1-005	432	25aa	ENSP00000421846.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y8R6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000514551.1	SLCO6A1-007	827	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000505407.1	SLCO6A1-008	669	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000514765.2	SLCO6A1-006	672	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000505739.1	SLCO6A1-009	450	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 672 bps,

Version

ENST00000514765.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000370340 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000514765.2 SLCO6A1-006

Summary