Transcript: ENST00000379807.3 SLCO6A1-002

Description

solute carrier organic anion transporter family, member 6A1 [Source:HGNC Symbol;Acc:23613]

Gene Synonyms

CT48, GST, MGC26949, OATP-I, OATP6A1, OATPY, SLC21A19

Location

Chromosome 5: 101,707,649-101,834,683 reverse strand.

About this transcript

This transcript has 14 exons, is annotated with 31 domains and features, is associated with 54740 variant alleles and maps to 464 oligo probes.

Gene

This transcript is a product of gene ENSG00000205359.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000506729.1	SLCO6A1-001	2689	719aa	ENSP00000421339.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34206	D3DSZ4 H0Y8R6 Q86UG4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000379807.3	SLCO6A1-002	2437	719aa	ENSP00000369135.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34206	D3DSZ4 H0Y8R6 Q86UG4	NM_173488.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000389019.3	SLCO6A1-003	2340	657aa	ENSP00000373671.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D3DSZ4 H0Y8R6 Q86UG4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000379810.1	SLCO6A1-201	1762	466aa	ENSP00000369138.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J020 H0Y8R6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000513675.1	SLCO6A1-004	1611	466aa	ENSP00000421990.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J020 H0Y8R6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000511588.1	SLCO6A1-005	432	25aa	ENSP00000421846.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y8R6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000514551.1	SLCO6A1-007	827	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000505407.1	SLCO6A1-008	669	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000514765.2	SLCO6A1-006	672	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000505739.1	SLCO6A1-009	450	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 14, Coding exons: 13, Transcript length: 2,437 bps, Translation length: 719 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q86UG4

CCDS

This transcript is a member of the Human CCDS set: CCDS34206

Version

ENST00000379807.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000370336 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000379807.3 SLCO6A1-002

Summary