Transcript: ENST00000479542.1 ABCF1-007

Description

ATP-binding cassette, sub-family F (GCN20), member 1 [Source:HGNC Symbol;Acc:70]

Gene Synonyms

ABC27, ABC50, EST123147

Location

Chromosome 6: 30,557,206-30,558,520 forward strand.

About this transcript

This transcript has 4 exons, is associated with 663 variant alleles and maps to 1307 oligo probes.

Gene

This transcript is a product of gene ENSG00000204574.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000326195.8	ABCF1-001	3481	845aa	ENSP00000313603.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34380	F5GYK6 Q8NE71	NM_001025091.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000376545.3	ABCF1-002	3131	807aa	ENSP00000365728.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34381	F5GYK6 Q2L6I2 Q8NE71	NM_001090.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000396515.4	ABCF1-201	1641	238aa	ENSP00000379772.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5STZ7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000441867.1	ABCF1-003	1074	339aa	ENSP00000405512.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GYK6 Q5STZ8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000468958.1	ABCF1-006	606	105aa	ENSP00000440893.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GYK6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000475993.1	ABCF1-005	2860	596aa	ENSP00000445100.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000479542.1	ABCF1-007	893	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000542772.1	ABCF1-008	223	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 893 bps,

Version

ENST00000479542.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000076140 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000479542.1 ABCF1-007

Summary