Transcript: ENST00000358385.6 ATL1-001

Description

atlastin GTPase 1 [Source:HGNC Symbol;Acc:11231]

Gene Synonyms

AD-FSP, ATL1-beta, FSP1, GBP3, HSN1D, SPG3, SPG3A, atlastin1

Location

Chromosome 14: 51,026,743-51,099,786 forward strand.

About this transcript

This transcript has 14 exons, is annotated with 15 domains and features, is associated with 28947 variant alleles and maps to 478 oligo probes.

Gene

This transcript is a product of gene ENSG00000198513.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000441560.2	ATL1-002	2853	553aa	ENSP00000413675.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32077	G3V321 G3V334 G3V4Y8 G3V5T4 Q8WXF7	NM_001127713.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000358385.6	ATL1-001	2647	558aa	ENSP00000351155.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9700	G3V321 G3V334 G3V4Y8 G3V5T4 Q8WXF7	NM_015915.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000357032.3	ATL1-202	2643	558aa	ENSP00000349534.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8WD04 G3V321 G3V334 G3V4Y8 G3V5T4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000354525.4	ATL1-201	2628	553aa	ENSP00000346522.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32077	G3V321 G3V334 G3V4Y8 G3V5T4 Q8WXF7	NM_181598.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000555960.1	ATL1-005	620	99aa	ENSP00000452506.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V321 G3V5T4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000557735.1	ATL1-012	570	47aa	ENSP00000451015.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V334	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000554886.1	ATL1-008	545	75aa	ENSP00000452074.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V4Y8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000553509.1	ATL1-006	527	29aa	ENSP00000450989.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V321	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000556067.1	ATL1-011	550	105aa	ENSP00000451100.1	Nonsense mediated decay		H0YJA7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000555266.1	ATL1-009	383	52aa	ENSP00000450897.1	Nonsense mediated decay		H0YJ65	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000556478.2	ATL1-003	644	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000553746.1	ATL1-007	370	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 14, Coding exons: 14, Transcript length: 2,647 bps, Translation length: 558 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8WXF7

CCDS

This transcript is a member of the Human CCDS set: CCDS9700

Version

ENST00000358385.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000276884 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000358385.6 ATL1-001

Summary