Transcript: ENST00000543397.1 SRGAP1-003

Description

SLIT-ROBO Rho GTPase activating protein 1 [Source:HGNC Symbol;Acc:17382]

Gene Synonyms

ARHGAP13, KIAA1304

Location

Chromosome 12: 64,376,305-64,537,560 forward strand.

About this transcript

This transcript has 21 exons, is annotated with 25 domains and features, is associated with 64680 variant alleles and maps to 561 oligo probes.

Gene

This transcript is a product of gene ENSG00000196935.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000355086.3	SRGAP1-001	8943	1085aa	ENSP00000347198.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8967	Q7Z6B7	NM_020762.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000357825.3	SRGAP1-201	8406	1062aa	ENSP00000350480.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G5EA48 Q7Z6B7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000543397.1	SRGAP1-003	5652	1022aa	ENSP00000437948.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G5EA48	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000537556.1	SRGAP1-002	2976	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000542841.1	SRGAP1-004	836	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000537585.1	SRGAP1-006	368	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000542381.1	SRGAP1-005	360	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 21, Coding exons: 21, Transcript length: 5,652 bps, Translation length: 1,022 residues

Version

ENST00000543397.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000400898 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000543397.1 SRGAP1-003

Summary