Transcript: ENST00000537556.1 SRGAP1-002

Description

SLIT-ROBO Rho GTPase activating protein 1 [Source:HGNC Symbol;Acc:17382]

Gene Synonyms

ARHGAP13, KIAA1304

Location

Chromosome 12: 64,238,583-64,475,704 forward strand.

About this transcript

This transcript has 10 exons, is associated with 96654 variant alleles and maps to 263 oligo probes.

Gene

This transcript is a product of gene ENSG00000196935.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000355086.3	SRGAP1-001	8943	1085aa	ENSP00000347198.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8967	Q7Z6B7	NM_020762.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000357825.3	SRGAP1-201	8406	1062aa	ENSP00000350480.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G5EA48 Q7Z6B7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000543397.1	SRGAP1-003	5652	1022aa	ENSP00000437948.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G5EA48	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000537556.1	SRGAP1-002	2976	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000542841.1	SRGAP1-004	836	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000537585.1	SRGAP1-006	368	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000542381.1	SRGAP1-005	360	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 0, Transcript length: 2,976 bps,

Version

ENST00000537556.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000400897 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000537556.1 SRGAP1-002

Summary