Transcript: ENST00000525295.1 SLC22A25-004

Description

solute carrier family 22, member 25 [Source:HGNC Symbol;Acc:32935]

Gene Synonyms

HIMTP, LOC387601, MGC120420, UST6

Location

Chromosome 11: 62,931,302-62,997,124 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 3 domains and features, is associated with 31565 variant alleles and maps to 199 oligo probes.

Gene

This transcript is a product of gene ENSG00000196600.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000403374.2	SLC22A25-201	2327	234aa	ENSP00000384208.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7BYX8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000306494.6	SLC22A25-001	1692	547aa	ENSP00000307443.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31592	Q6T423	NM_199352.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000528239.1	SLC22A25-002	3699	202aa	ENSP00000431235.1	Nonsense mediated decay		A4IF28	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000527057.1	SLC22A25-005	1788	399aa	ENSP00000432242.1	Nonsense mediated decay		A4IF29	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000525295.1	SLC22A25-004	1362	156aa	ENSP00000435614.1	Nonsense mediated decay		E9PJ86 Q494Y1	-	-

Summary

Statistics

Exons: 7, Coding exons: 2, Transcript length: 1,362 bps, Translation length: 156 residues

Version

ENST00000525295.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Stop codons

This transcript has a variant, rs11231397, that causes a stop codon to be lost in at least 10% of HapMap or 1000 Genome population(s) CSHL-HAPMAP:HapMap-HCB, ESP6500:African_American, ESP6500:European_American, CSHL-HAPMAP:HapMap-JPT, CSHL-HAPMAP:HapMap-CEU, CSHL-HAPMAP:HapMap-YRI.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000383554 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000525295.1 SLC22A25-004

Summary