Transcript: ENST00000410080.1 PRPF40A-001

Description

PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:16463]

Gene Synonyms

FBP-11, FBP11, FLAF1, FLJ20585, FNBP3, HIP-10, HIP10, HYPA, NY-REN-6, Prp40

Location

Chromosome 2: 153,508,107-153,574,495 reverse strand.

About this transcript

This transcript has 26 exons, is annotated with 56 domains and features, is associated with 31313 variant alleles and maps to 1257 oligo probes.

Gene

This transcript is a product of gene ENSG00000196504.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000410080.1	PRPF40A-001	8048	930aa	ENSP00000386458.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46430	O75400 Q4ZG51	NM_017892.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000545856.1	PRPF40A-004	1358	448aa	ENSP00000444656.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H578	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000493468.2	PRPF40A-016	1043	346aa	ENSP00000441656.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YG38	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000448428.1	PRPF40A-008	490	163aa	ENSP00000406924.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C2N3	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000354363.6	PRPF40A-015	1622	109aa	ENSP00000346332.6	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000486100.1	PRPF40A-003	569	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000489741.1	PRPF40A-006	776	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000467114.2	PRPF40A-009	546	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000450303.2	PRPF40A-002	496	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000471167.1	PRPF40A-013	333	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000471701.1	PRPF40A-014	293	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000472760.1	PRPF40A-012	243	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 26, Coding exons: 26, Transcript length: 8,048 bps, Translation length: 930 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O75400

CCDS

This transcript is a member of the Human CCDS set: CCDS46430

Version

ENST00000410080.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000333559 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000410080.1 PRPF40A-001

Summary