Transcript: ENST00000536376.1 ATP2A1-003

Description

ATPase, Ca++ transporting, cardiac muscle, fast twitch 1 [Source:HGNC Symbol;Acc:811]

Gene Synonyms

ATP2A, SERCA1

Location

Chromosome 16: 28,891,374-28,915,785 forward strand.

About this transcript

This transcript has 21 exons, is annotated with 34 domains and features, is associated with 12212 variant alleles and maps to 550 oligo probes.

Gene

This transcript is a product of gene ENSG00000196296.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000395503.4	ATP2A1-002	3536	994aa	ENSP00000378879.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42139	B3KS35 B3KY17 H3BUU3 O14983	NM_004320.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000357084.3	ATP2A1-001	3532	1001aa	ENSP00000349595.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10643	H3BUU3 O14983	NM_173201.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000536376.1	ATP2A1-003	3130	869aa	ENSP00000443101.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS66997	B3KS35 B3KY17 H3BUU3	NM_001286075.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000562185.1	ATP2A1-008	576	26aa	ENSP00000457798.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BUU3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000563975.1	ATP2A1-007	545	113aa	ENSP00000458035.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BVB2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000564112.1	ATP2A1-010	195	24aa	ENSP00000457793.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000564732.1	ATP2A1-009	831	128aa	ENSP00000457357.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000564470.1	ATP2A1-005	467	41aa	ENSP00000457148.1	Nonsense mediated decay		H3BTF1	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000565042.1	ATP2A1-006	239	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 21, Coding exons: 18, Transcript length: 3,130 bps, Translation length: 869 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS66997

Version

ENST00000536376.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000432683 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

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Recent locations

Transcript: ENST00000536376.1 ATP2A1-003

Summary