Transcript: ENST00000294008.3 SLX4-001

Description

SLX4 structure-specific endonuclease subunit [Source:HGNC Symbol;Acc:23845]

Gene Synonyms

BTBD12, FANCP, KIAA1784, KIAA1987, MUS312

Location

About this transcript

This transcript has 15 exons, is annotated with 24 domains and features, is associated with 18692 variant alleles and maps to 642 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000294008.3	SLX4-001	7307	1834aa	ENSP00000294008.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10506	Q8IY92	NM_032444.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000466154.1	SLX4-003	3228	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000486524.1	SLX4-002	3075	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 15, Coding exons: 14, Transcript length: 7,307 bps, Translation length: 1,834 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8IY92

CCDS

This transcript is a member of the Human CCDS set: CCDS10506

Version

ENST00000294008.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000157301 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.