Transcript: ENST00000342887.1 C12orf55-009

Description

chromosome 12 open reading frame 55 [Source:HGNC Symbol;Acc:26456]

Gene Synonyms

C12orf63, FLJ31514, FLJ44112

Location

Chromosome 12: 97,041,753-97,159,048 forward strand.

About this transcript

This transcript has 27 exons, is associated with 49660 variant alleles and maps to 545 oligo probes.

Gene

This transcript is a product of gene ENSG00000188596.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq	Flags
ENST00000524981.4	C12orf55-003	9766	3096aa	ENSP00000431759.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9PJL5 R4GNI2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000550977.2	C12orf55-004	2756	265aa	ENSP00000449035.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000298953.3	C12orf55-201	2418	805aa	ENSP00000298953.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I3L078 R4GNI2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000553778.2	C12orf55-002	1967	644aa	ENSP00000452066.2	Non stop decay	G3V4Y4	-	-
ENST00000554108.2	C12orf55-008	2323	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000556591.1	C12orf55-007	802	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000342887.1	C12orf55-009	3686	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000554621.1	C12orf55-005	724	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000554821.1	C12orf55-006	474	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-

Summary

Statistics

Exons: 27, Coding exons: 0, Transcript length: 3,686 bps,

Version

ENST00000342887.1

Type

Retained intron

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000468155 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000342887.1 C12orf55-009

Summary