Transcript: ENST00000341459.3 SLC24A5-001

Description

solute carrier family 24 (sodium/potassium/calcium exchanger), member 5 [Source:HGNC Symbol;Acc:20611]

Gene Synonyms

JSX, NCKX5, OCA6, SHEP4

Location

About this transcript

This transcript has 9 exons, is annotated with 19 domains and features, is associated with 8980 variant alleles and maps to 348 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000482911.2	SLC24A5-002	2984	122aa	ENSP00000453395.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YLZ0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000341459.3	SLC24A5-001	1897	500aa	ENSP00000341550.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10128	Q71RS6	NM_205850.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000449382.2	SLC24A5-004	1388	440aa	ENSP00000389966.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q71RS6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000463289.1	SLC24A5-003	870	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,897 bps, Translation length: 500 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q71RS6

CCDS

This transcript is a member of the Human CCDS set: CCDS10128

Version

ENST00000341459.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000254340 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.