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Human (GRCh37.p13)
Description

lipocalin 10 [Source:HGNC Symbol;Acc:20892]

About this transcript

This transcript has 6 exons, is annotated with 8 domains and features, is associated with 1515 variant alleles and maps to 217 oligo probes.

Gene
Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeqFlags
ENST00000497771.1LCN10-001723200aaENSP00000418491.1
 
Protein coding
CCDS35182E9PRR3 Q6JVE6 NM_001001712
NP_001001712
GENCODE basic
ENST00000527229.1LCN10-006615164aaENSP00000431726.1
 
Protein coding
E9PK15 E9PRR3 -GENCODE basic
ENST00000474369.1LCN10-002564187aaENSP00000420564.1
 
Protein coding
E9PRR3 Q6JVE6 -GENCODE basic
ENST00000341040.7LCN10-003178086aaENSP00000435948.1
 
Nonsense mediated decay
E9PRR3 --
ENST00000529013.1LCN10-01057037aaENSP00000431930.1
 
Nonsense mediated decay
--CDS 5' incomplete
ENST00000532006.1LCN10-00744375aaENSP00000434410.1
 
Nonsense mediated decay
E9PQQ7 --
ENST00000406721.3LCN10-0043262No protein-
 
Retained intron
---
ENST00000494294.1LCN10-0052505No protein-
 
Retained intron
---
Statistics

Exons: 6, Coding exons: 6, Transcript length: 723 bps, Translation length: 200 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS35182

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6JVE6

Version

ENST00000497771.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Stop codons

This transcript has a variant, rs9886752, that causes a stop codon to be gained in at least 10% of HapMap or 1000 Genome population(s) CSHL-HAPMAP:HapMap-HCB, CSHL-HAPMAP:HAPMAP-MKK, ESP6500:European_American, CSHL-HAPMAP:HAPMAP-CHB, ESP6500:African_American, CSHL-HAPMAP:HAPMAP-LWK, CSHL-HAPMAP:HapMap-CEU, CSHL-HAPMAP:HAPMAP-TSI, CSHL-HAPMAP:HapMap-YRI, CSHL-HAPMAP:HAPMAP-MEX, CSHL-HAPMAP:HapMap-JPT, CSHL-HAPMAP:HAPMAP-CHD.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:
OTTHUMT00000318061 (version 1)
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays