Transcript: ENST00000494294.1 LCN10-005

Description

lipocalin 10 [Source:HGNC Symbol;Acc:20892]

Location

Chromosome 9: 139,632,619-139,636,456 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 2054 variant alleles and maps to 299 oligo probes.

Gene

This transcript is a product of gene ENSG00000187922.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000497771.1	LCN10-001	723	200aa	ENSP00000418491.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS35182	E9PRR3 Q6JVE6	NM_001001712.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000527229.1	LCN10-006	615	164aa	ENSP00000431726.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PK15 E9PRR3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000474369.1	LCN10-002	564	187aa	ENSP00000420564.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PRR3 Q6JVE6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000341040.7	LCN10-003	1780	86aa	ENSP00000435948.1	Nonsense mediated decay		E9PRR3	-	-
ENST00000529013.1	LCN10-010	570	37aa	ENSP00000431930.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000532006.1	LCN10-007	443	75aa	ENSP00000434410.1	Nonsense mediated decay		E9PQQ7	-	-
ENST00000406721.3	LCN10-004	3262	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000494294.1	LCN10-005	2505	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 2,505 bps,

Version

ENST00000494294.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000055105 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000494294.1 LCN10-005

Summary