Transcript: ENST00000371632.3 LCN12-003

Description

lipocalin 12 [Source:HGNC Symbol;Acc:28733]

Gene Synonyms

MGC48935

Location

Chromosome 9: 139,847,428-139,849,949 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 4 domains and features, is associated with 1599 variant alleles and maps to 197 oligo probes.

Gene

This transcript is a product of gene ENSG00000184925.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000371633.3	LCN12-015	579	192aa	ENSP00000360696.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7018	Q6JVE5	NM_178536.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000371632.3	LCN12-003	403	90aa	ENSP00000360695.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5SQ16	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000471615.2	LCN12-004	489	102aa	ENSP00000473473.1	Nonsense mediated decay		R4GN38	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000466277.1	LCN12-007	781	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000463714.2	LCN12-010	731	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000491316.1	LCN12-001	629	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000491603.1	LCN12-009	553	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000484304.1	LCN12-005	545	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000476751.1	LCN12-008	536	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000492820.1	LCN12-014	535	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000494713.1	LCN12-006	524	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000496895.1	LCN12-011	449	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000480204.1	LCN12-002	436	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000495410.1	LCN12-012	401	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000470501.1	LCN12-013	1804	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 403 bps, Translation length: 90 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000371632.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000055238 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000371632.3 LCN12-003

Summary