Transcript: ENST00000518140.1 SLIT3-003

Description

slit homolog 3 (Drosophila) [Source:HGNC Symbol;Acc:11087]

Gene Synonyms

KIAA0814, MEGF5, SLIL2, SLIT1, Slit-3, slit2

Location

Chromosome 5: 168,199,192-168,727,750 reverse strand.

About this transcript

This transcript has 14 exons, is associated with 236028 variant alleles and maps to 322 oligo probes.

Gene

This transcript is a product of gene ENSG00000184347.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000519560.1	SLIT3-001	9706	1523aa	ENSP00000430333.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4369	O75094	NM_003062.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000332966.8	SLIT3-002	4895	1530aa	ENSP00000332164.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS64311	J3KNP3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000404867.3	SLIT3-201	4419	1472aa	ENSP00000384890.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O75094	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000521130.1	SLIT3-008	972	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000518092.1	SLIT3-007	594	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000519486.1	SLIT3-004	4228	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000518140.1	SLIT3-003	2090	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000521150.1	SLIT3-006	987	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 14, Coding exons: 0, Transcript length: 2,090 bps,

Version

ENST00000518140.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000371505 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000518140.1 SLIT3-003

Summary