Transcript: ENST00000404574.1 SMTN-009

Description

smoothelin [Source:HGNC Symbol;Acc:11126]

Gene Synonyms

SMSMO

Location

Chromosome 22: 31,489,344-31,500,609 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 16 domains and features, is associated with 5301 variant alleles and maps to 545 oligo probes.

Gene

This transcript is a product of gene ENSG00000183963.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000333137.7	SMTN-002	3295	915aa	ENSP00000329532.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13888	B3KTQ6 C9JGQ0 C9JP19 P53814	NM_134269.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000358743.1	SMTN-003	3198	940aa	ENSP00000351593.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13887	C9JGQ0 C9JP19 P53814	NM_134270.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000347557.2	SMTN-001	3130	917aa	ENSP00000328635.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13886	C9JGQ0 C9JP19 P53814	NM_006932.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000404574.1	SMTN-009	1735	438aa	ENSP00000383919.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KTQ6 B5MCI0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000416786.1	SMTN-018	823	98aa	ENSP00000409990.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JP19	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000455608.1	SMTN-021	648	216aa	ENSP00000392329.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7BZZ8	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000440425.1	SMTN-013	599	151aa	ENSP00000401341.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JBH9 C9JGQ0 C9JV14 C9JYU8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000426927.1	SMTN-015	574	141aa	ENSP00000399432.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JBH9 C9JGQ0 C9JV14	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000432777.1	SMTN-011	567	91aa	ENSP00000398663.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JBH9 C9JGQ0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000422839.1	SMTN-012	566	37aa	ENSP00000390453.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JGQ0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000438223.1	SMTN-023	545	182aa	ENSP00000409925.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JGQ0	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000431481.1	SMTN-017	534	158aa	ENSP00000394637.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JQZ8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000475548.1	SMTN-019	598	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000482444.1	SMTN-014	589	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000460658.1	SMTN-006	5080	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000489337.1	SMTN-004	3560	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000493335.1	SMTN-007	2937	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000504335.1	SMTN-024	2608	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000466272.1	SMTN-020	576	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000497697.1	SMTN-016	558	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000472911.1	SMTN-022	543	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 1,735 bps, Translation length: 438 residues

Version

ENST00000404574.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000321774 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000404574.1 SMTN-009

Summary