Transcript: ENST00000378444.4 BCOR-003

Description

BCL6 corepressor [Source:HGNC Symbol;Acc:20893]

Gene Synonyms

ANOP2, FLJ20285, KIAA1575, MAA2, MCOPS2

Location

Chromosome X: 39,910,501-39,956,656 reverse strand.

About this transcript

This transcript has 15 exons, is annotated with 15 domains and features, is associated with 19566 variant alleles and maps to 610 oligo probes.

Gene

This transcript is a product of gene ENSG00000183337.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000378444.4	BCOR-003	6358	1755aa	ENSP00000367705.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS48093	B3KTC2 C9JHP3 H7BZ37 H9A532 Q6W2J9	NM_001123385.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000342274.4	BCOR-201	6390	1721aa	ENSP00000345923.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14250	C9JHP3 H7BYY2 H7BZ37 Q6W2J9	NM_001123383.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000378455.4	BCOR-004	6338	1703aa	ENSP00000367716.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS48092	C9JHP3 H7BZ37 Q6W2J9	NM_001123384.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000397354.3	BCOR-007	6258	1721aa	ENSP00000380512.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14250	C9JHP3 H7BYY2 H7BZ37 Q6W2J9	NM_017745.5	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000406200.2	BCOR-006	4216	1287aa	ENSP00000384485.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JHP3 H7BYY2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000378463.1	BCOR-008	2230	622aa	ENSP00000367724.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6NE70 H7BZ37	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000442018.1	BCOR-010	2189	332aa	ENSP00000387552.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7BZ37	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000427012.1	BCOR-002	1969	289aa	ENSP00000403823.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000413905.1	BCOR-001	1945	594aa	ENSP00000408006.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7BZ37 H7C2V9	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000412952.1	BCOR-005	288	28aa	ENSP00000390273.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JHP3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000490976.1	BCOR-009	3480	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 15, Coding exons: 14, Transcript length: 6,358 bps, Translation length: 1,755 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6W2J9

CCDS

This transcript is a member of the Human CCDS set: CCDS48093

Version

ENST00000378444.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000060666 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000378444.4 BCOR-003

Summary