Transcript: ENST00000355530.2 SPNS3-001

Description

spinster homolog 3 (Drosophila) [Source:HGNC Symbol;Acc:28433]

Gene Synonyms

MGC29671

Location

Chromosome 17: 4,336,983-4,391,503 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 21 domains and features, is associated with 28712 variant alleles and maps to 442 oligo probes.

Gene

This transcript is a product of gene ENSG00000182557.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000355530.2	SPNS3-001	2133	512aa	ENSP00000347721.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11045	Q6ZMD2	NM_182538.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000333476.2	SPNS3-201	1755	385aa	ENSP00000333207.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6ZMD2	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000575194.1	SPNS3-002	1721	202aa	ENSP00000460781.1	Nonsense mediated decay		I3L3W7	-	-
ENST00000576069.1	SPNS3-004	834	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000575796.1	SPNS3-007	531	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000575185.1	SPNS3-006	496	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000572078.1	SPNS3-005	463	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 2,133 bps, Translation length: 512 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6ZMD2

CCDS

This transcript is a member of the Human CCDS set: CCDS11045

Version

ENST00000355530.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000438793 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000355530.2 SPNS3-001

Summary