Transcript: ENST00000329082.7 RGMA-001

Description

repulsive guidance molecule family member a [Source:HGNC Symbol;Acc:30308]

Gene Synonyms

RGM, RGMa

Location

Chromosome 15: 93,586,637-93,632,433 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 8 domains and features, is associated with 23450 variant alleles and maps to 314 oligo probes.

Gene

This transcript is a product of gene ENSG00000182175.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000329082.7	RGMA-001	3216	450aa	ENSP00000330005.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45357	F5GZU6 F5H7G2 G3V4C2 Q96B86	NM_020211.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000543599.1	RGMA-203	3174	434aa	ENSP00000442498.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53973	F5GZU6 F5H7G2 G3V4C2	NM_001166287.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000538818.1	RGMA-202	3172	341aa	ENSP00000442546.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H7G2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000425933.2	RGMA-201	3078	434aa	ENSP00000404442.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53973	F5GZU6 F5H7G2 G3V4C2	NM_001166289.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000542321.2	RGMA-007	3038	434aa	ENSP00000440025.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53973	F5GZU6 F5H7G2 G3V4C2	NM_001166286.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000556658.1	RGMA-006	1889	341aa	ENSP00000456290.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H7G2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000556087.1	RGMA-003	1752	206aa	ENSP00000455634.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V4C2 H3BQ68	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000557301.1	RGMA-004	1664	458aa	ENSP00000452126.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53974	F5GZU6 F5H7G2 G3V4C2 G3V518	NM_001166283.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000557420.1	RGMA-010	989	46aa	ENSP00000452170.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V545	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000555598.1	RGMA-009	547	90aa	ENSP00000451709.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V4C2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000556950.1	RGMA-008	320	10aa	ENSP00000452350.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000554387.1	RGMA-005	3172	61aa	ENSP00000451505.1	Nonsense mediated decay		G3V3Z3	-	-
ENST00000555584.1	RGMA-012	552	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000557608.1	RGMA-011	473	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 3,216 bps, Translation length: 450 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96B86

CCDS

This transcript is a member of the Human CCDS set: CCDS45357

Version

ENST00000329082.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000415091 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000329082.7 RGMA-001

Summary