Transcript: ENST00000397910.4 MUC16-001

Description

mucin 16, cell surface associated [Source:HGNC Symbol;Acc:15582]

Gene Synonyms

CA125, FLJ14303

Location

About this transcript

This transcript has 84 exons, is annotated with 217 domains and features, is associated with 86114 variant alleles and maps to 1781 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000397910.4	MUC16-001	43816	14507aa	ENSP00000381008.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54212	B5ME49 F8WE81	NM_024690.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000599436.1	MUC16-004	4079	1330aa	ENSP00000472781.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000380951.5	MUC16-201	3557	1148aa	ENSP00000370338.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8WE81	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000601404.1	MUC16-002	4078	1224aa	ENSP00000470885.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000596768.1	MUC16-003	2888	670aa	ENSP00000472883.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000596956.1	MUC16-005	352	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 84, Coding exons: 84, Transcript length: 43,816 bps, Translation length: 14,507 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS54212

Version

ENST00000397910.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000402806 (version 1)

Annotation Attributes

dotter confirmed [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.