Transcript: ENST00000439068.2 LSMEM1-003

Description

leucine-rich single-pass membrane protein 1 [Source:HGNC Symbol;Acc:22036]

Gene Synonyms

C7orf53, FLJ39575

Location

About this transcript

This transcript has 4 exons, is annotated with 3 domains and features, is associated with 2475 variant alleles and maps to 155 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000312849.4	LSMEM1-001	1870	131aa	ENSP00000323304.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5756	Q8N8F7	NM_182597.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000439068.2	LSMEM1-003	730	131aa	ENSP00000389278.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5756	Q8N8F7	NM_001134468.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000429049.1	LSMEM1-201	541	59aa	ENSP00000415047.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8N8F7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000455302.1	LSMEM1-002	819	59aa	ENSP00000412823.1	Nonsense mediated decay		Q8N8F7	-	-
ENST00000486022.1	LSMEM1-005	604	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000471030.1	LSMEM1-004	483	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 730 bps, Translation length: 131 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8N8F7

CCDS

This transcript is a member of the Human CCDS set: CCDS5756

Version

ENST00000439068.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000338718 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.