Transcript: ENST00000396410.4 PDXDC1-001

Description

pyridoxal-dependent decarboxylase domain containing 1 [Source:HGNC Symbol;Acc:28995]

Gene Synonyms

KIAA0251, LP8165

Location

Chromosome 16: 15,068,960-15,131,552 forward strand.

About this transcript

This transcript has 23 exons, is annotated with 9 domains and features, is associated with 37028 variant alleles and maps to 962 oligo probes.

Gene

This transcript is a product of gene ENSG00000179889.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000396410.4	PDXDC1-001	3884	788aa	ENSP00000379691.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32393	H3BM88 H3BQS3 H3BU11 J3KNK7 Q6P996	NM_015027.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000569715.1	PDXDC1-004	3775	761aa	ENSP00000455070.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS66954	H3BNZ1 H3BQS3	NM_001285444.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000563679.1	PDXDC1-006	2963	806aa	ENSP00000454791.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BND4 H3BQS3 H3BU11 J3KNK7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000325823.7	PDXDC1-201	2812	773aa	ENSP00000322807.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BQS3 H3BU11 J3KNK7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000450288.2	PDXDC1-203	2683	760aa	ENSP00000391147.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS66955	E7EPL4	NM_001285445.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000447912.2	PDXDC1-202	2533	697aa	ENSP00000400310.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS66957	E7EMH5 H3BQS3	NM_001285448.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000455313.2	PDXDC1-003	2183	429aa	ENSP00000406703.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BM88 H3BNL6 H3BQS3 H3BU11 Q6P996	NM_001285450.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000535621.2	PDXDC1-016	2048	498aa	ENSP00000437835.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BM88 H3BQS3 H3BU11 Q6XYB5 Q86XE2	NM_001285449.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000567306.1	PDXDC1-013	980	271aa	ENSP00000454910.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BNL6 H3BQS3 H3BU11	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000563522.1	PDXDC1-010	556	120aa	ENSP00000457417.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BQS3 H3BU11	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000563667.1	PDXDC1-009	554	185aa	ENSP00000455613.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BQS3 H3BU11	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000566426.1	PDXDC1-011	283	24aa	ENSP00000455914.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BQS3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000562119.1	PDXDC1-012	884	64aa	ENSP00000455486.1	Nonsense mediated decay		H3BPV5 H3BQS3	-	-
ENST00000565362.1	PDXDC1-007	720	81aa	ENSP00000454279.1	Nonsense mediated decay		H3BM88 H3BQS3	-	-
ENST00000570001.1	PDXDC1-002	4828	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000566633.1	PDXDC1-008	2597	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000561930.1	PDXDC1-014	568	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000565986.1	PDXDC1-015	561	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 23, Coding exons: 23, Transcript length: 3,884 bps, Translation length: 788 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6P996

CCDS

This transcript is a member of the Human CCDS set: CCDS32393

Version

ENST00000396410.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000389065 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000396410.4 PDXDC1-001

Summary