Transcript: ENST00000565334.1 CDH5-008

Description

cadherin 5, type 2 (vascular endothelium) [Source:HGNC Symbol;Acc:1764]

Gene Synonyms

7B4, CD144

Location

Chromosome 16: 66,400,593-66,437,311 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 5 domains and features, is associated with 16729 variant alleles and maps to 431 oligo probes.

Gene

This transcript is a product of gene ENSG00000179776.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000341529.3	CDH5-001	4117	784aa	ENSP00000344115.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10804	B4DTR2 H3BPG1 H3BR64 I3L1J2 P33151 Q59EA3	NM_001795.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000563425.2	CDH5-007	1932	406aa	ENSP00000458878.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BPG1 H3BR64 I3L1J2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000539168.1	CDH5-002	1672	223aa	ENSP00000461880.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DTR2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000562048.1	CDH5-005	615	131aa	ENSP00000455302.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BPG1 H3BR64	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000568023.1	CDH5-003	591	17aa	ENSP00000455655.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000568155.2	CDH5-004	459	76aa	ENSP00000456093.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BR64	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000565334.1	CDH5-008	2138	110aa	ENSP00000456028.1	Nonsense mediated decay		H3BR11 H3BR64	-	-

Summary

Statistics

Exons: 10, Coding exons: 3, Transcript length: 2,138 bps, Translation length: 110 residues

Version

ENST00000565334.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000420994 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000565334.1 CDH5-008

Summary