Transcript: ENST00000539168.1 CDH5-002

Description

cadherin 5, type 2 (vascular endothelium) [Source:HGNC Symbol;Acc:1764]

Gene Synonyms

7B4, CD144

Location

Chromosome 16: 66,429,358-66,437,238 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 8 domains and features, is associated with 3934 variant alleles and maps to 168 oligo probes.

Gene

This transcript is a product of gene ENSG00000179776.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000341529.3	CDH5-001	4117	784aa	ENSP00000344115.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10804	B4DTR2 H3BPG1 H3BR64 I3L1J2 P33151 Q59EA3	NM_001795.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000563425.2	CDH5-007	1932	406aa	ENSP00000458878.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BPG1 H3BR64 I3L1J2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000539168.1	CDH5-002	1672	223aa	ENSP00000461880.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DTR2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000562048.1	CDH5-005	615	131aa	ENSP00000455302.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BPG1 H3BR64	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000568023.1	CDH5-003	591	17aa	ENSP00000455655.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000568155.2	CDH5-004	459	76aa	ENSP00000456093.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BR64	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000565334.1	CDH5-008	2138	110aa	ENSP00000456028.1	Nonsense mediated decay		H3BR11 H3BR64	-	-

Summary

Statistics

Exons: 6, Coding exons: 2, Transcript length: 1,672 bps, Translation length: 223 residues

Version

ENST00000539168.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000421001 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000539168.1 CDH5-002

Summary