Transcript: ENST00000450172.1 ALS2CL-004

Description

ALS2 C-terminal like [Source:HGNC Symbol;Acc:20605]

Gene Synonyms

DKFZp686I0110, FLJ36525, RN49018

Location

Chromosome 3: 46,712,089-46,735,171 reverse strand.

About this transcript

This transcript has 22 exons, is annotated with 18 domains and features, is associated with 10764 variant alleles and maps to 1184 oligo probes.

Gene

This transcript is a product of gene ENSG00000178038.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000318962.4	ALS2CL-001	4741	953aa	ENSP00000313670.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2743	G3V0I7 Q60I27	NM_147129.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000415953.1	ALS2CL-002	3471	953aa	ENSP00000413223.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2743	G3V0I7 Q60I27	NM_001190707.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000383742.3	ALS2CL-008	1747	300aa	ENSP00000373248.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43080	Q60I27	NM_182775.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000450172.1	ALS2CL-004	6593	479aa	ENSP00000395663.1	Nonsense mediated decay		G3V0I7	-	-
ENST00000431015.1	ALS2CL-003	6563	523aa	ENSP00000416575.1	Nonsense mediated decay		F8WCP1	-	-
ENST00000423707.1	ALS2CL-006	4470	302aa	ENSP00000395749.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000434140.1	ALS2CL-005	3937	535aa	ENSP00000405335.1	Nonsense mediated decay		G5E9N5	-	-
ENST00000486301.1	ALS2CL-007	4431	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000498817.1	ALS2CL-009	1065	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000473484.1	ALS2CL-010	564	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 22, Coding exons: 12, Transcript length: 6,593 bps, Translation length: 479 residues

Version

ENST00000450172.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000344287 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000450172.1 ALS2CL-004

Summary