Transcript: ENST00000313599.3 CD163L1-001

Description

CD163 molecule-like 1 [Source:HGNC Symbol;Acc:30375]

Gene Synonyms

CD163B, M160

Location

Chromosome 12: 7,507,556-7,596,781 reverse strand.

About this transcript

This transcript has 20 exons, is annotated with 75 domains and features, is associated with 39681 variant alleles and maps to 580 oligo probes.

Gene

This transcript is a product of gene ENSG00000177675.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000313599.3	CD163L1-001	4615	1453aa	ENSP00000315945.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8577	F5H7R7 Q9NR16	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000416109.2	CD163L1-002	4603	1463aa	ENSP00000393474.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9NR16	NM_174941.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000396630.1	CD163L1-201	4484	1421aa	ENSP00000379871.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H7R7 Q9NR16	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000539726.1	CD163L1-006	815	109aa	ENSP00000438217.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000545926.1	CD163L1-003	568	189aa	ENSP00000439921.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YFR4	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000543276.1	CD163L1-010	532	61aa	ENSP00000442328.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H7R7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000546182.1	CD163L1-005	470	58aa	ENSP00000443004.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000544331.1	CD163L1-004	563	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000543841.1	CD163L1-008	591	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000542055.1	CD163L1-009	398	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000545597.1	CD163L1-007	266	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 20, Coding exons: 19, Transcript length: 4,615 bps, Translation length: 1,453 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NR16

CCDS

This transcript is a member of the Human CCDS set: CCDS8577

Version

ENST00000313599.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000399329 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000313599.3 CD163L1-001

Summary