Transcript: ENST00000527170.1 DEAF1-002

Description

DEAF1 transcription factor [Source:HGNC Symbol;Acc:14677]

Gene Synonyms

NUDR, SPN, ZMYND5

Location

Chromosome 11: 644,233-687,936 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 12 domains and features, is associated with 23281 variant alleles and maps to 414 oligo probes.

Gene

This transcript is a product of gene ENSG00000177030.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000382409.3	DEAF1-001	2500	565aa	ENSP00000371846.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31327	O75398	NM_021008.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000338675.6	DEAF1-201	1905	490aa	ENSP00000341902.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O75398	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000527170.1	DEAF1-002	1623	349aa	ENSP00000431563.1	Nonsense mediated decay		Q59EI0	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000529717.1	DEAF1-003	705	86aa	ENSP00000432518.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000525904.1	DEAF1-013	797	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000527658.1	DEAF1-011	691	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000530813.1	DEAF1-009	668	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000525626.1	DEAF1-007	585	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000526857.2	DEAF1-008	567	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000528864.1	DEAF1-004	557	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000524786.1	DEAF1-005	475	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000529727.1	DEAF1-006	248	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000526790.1	DEAF1-010	498	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 1,623 bps, Translation length: 349 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000527170.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000383843 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000527170.1 DEAF1-002

Summary