Transcript: ENST00000527141.1 CTSF-002

Description

cathepsin F [Source:HGNC Symbol;Acc:2531]

Gene Synonyms

CATSF, CLN13

Location

Chromosome 11: 66,330,935-66,334,966 reverse strand.

About this transcript

This transcript has 10 exons, is associated with 2093 variant alleles and maps to 378 oligo probes.

Gene

This transcript is a product of gene ENSG00000174080.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000310325.5	CTSF-001	2035	484aa	ENSP00000310832.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8144	E9PSC2 Q9UBX1	NM_003793.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000524994.1	CTSF-009	846	282aa	ENSP00000433082.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000526010.1	CTSF-003	548	120aa	ENSP00000435822.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PSC2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000525733.1	CTSF-008	609	82aa	ENSP00000434936.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000533168.1	CTSF-004	576	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000529561.1	CTSF-005	559	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000527141.1	CTSF-002	1856	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000529199.1	CTSF-006	578	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000530565.1	CTSF-007	555	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 0, Transcript length: 1,856 bps,

Version

ENST00000527141.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000393048 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000527141.1 CTSF-002

Summary