Transcript: ENST00000560241.1 IL16-007

Description

interleukin 16 [Source:HGNC Symbol;Acc:5980]

Gene Synonyms

FLJ16806, FLJ42735, HsT19289, IL-16, LCF, NIL16, PRIL16, prIL-16

Location

Chromosome 15: 81,474,941-81,585,281 forward strand.

About this transcript

This transcript has 13 exons, is annotated with 15 domains and features, is associated with 47248 variant alleles and maps to 456 oligo probes.

Gene

This transcript is a product of gene ENSG00000172349.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000394660.2	IL16-001	8321	1331aa	ENSP00000378155.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53966	H0YLL1 Q14005	NM_172217.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000302987.4	IL16-003	3999	1332aa	ENSP00000302935.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42069	H0YLL1 Q14005	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000559388.1	IL16-010	3930	1221aa	ENSP00000458125.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BVH5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000394652.2	IL16-002	2397	631aa	ENSP00000378147.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10317	Q14005	NM_004513.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000559383.1	IL16-006	2158	594aa	ENSP00000453250.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YLL1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000558332.1	IL16-005	2020	611aa	ENSP00000453214.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000360547.5	IL16-009	5120	484aa	ENSP00000456972.1	Nonsense mediated decay		H3BT15	-	-
ENST00000560115.1	IL16-013	3775	201aa	ENSP00000454636.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000560241.1	IL16-007	2977	454aa	ENSP00000452738.1	Nonsense mediated decay		H0YKB7	-	-
ENST00000558857.1	IL16-004	1922	44aa	ENSP00000453131.1	Nonsense mediated decay		H0YLB1	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000560230.1	IL16-016	626	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000559342.1	IL16-014	561	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000560989.1	IL16-017	545	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000559953.1	IL16-015	525	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 13, Coding exons: 10, Transcript length: 2,977 bps, Translation length: 454 residues

Version

ENST00000560241.1

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000417528 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000560241.1 IL16-007

Summary