Transcript: ENST00000399262.2 JMJD1C-001

Description

jumonji domain containing 1C [Source:HGNC Symbol;Acc:12313]

Gene Synonyms

DKFZp761F0118, FLJ14374, JHDM2C, KIAA1380, RP11-10C13.2, TRIP8

Location

Chromosome 10: 64,926,981-65,225,641 reverse strand.

About this transcript

This transcript has 26 exons, is annotated with 23 domains and features, is associated with 143391 variant alleles and maps to 1127 oligo probes.

Gene

This transcript is a product of gene ENSG00000171988.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000399262.2	JMJD1C-001	8666	2540aa	ENSP00000382204.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41532	Q15652	NM_032776.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000399251.1	JMJD1C-201	8536	1480aa	ENSP00000382195.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q15652	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000402544.1	JMJD1C-202	8391	2303aa	ENSP00000384990.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44410	-	NM_004241.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000542921.1	JMJD1C-203	8149	2358aa	ENSP00000444682.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS60538	Q15652	NM_001282948.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000327520.7	JMJD1C-002	3781	956aa	ENSP00000335929.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000489372.2	JMJD1C-008	913	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000497922.1	JMJD1C-005	775	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000483298.1	JMJD1C-006	772	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000469152.1	JMJD1C-007	734	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490669.1	JMJD1C-004	518	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000467356.1	JMJD1C-003	1305	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 26, Coding exons: 26, Transcript length: 8,666 bps, Translation length: 2,540 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q15652

CCDS

This transcript is a member of the Human CCDS set: CCDS41532

Version

ENST00000399262.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000048249 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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All species

Recent locations

Transcript: ENST00000399262.2 JMJD1C-001

Summary