Transcript: ENST00000327520.7 JMJD1C-002

Description

jumonji domain containing 1C [Source:HGNC Symbol;Acc:12313]

Gene Synonyms

DKFZp761F0118, FLJ14374, JHDM2C, KIAA1380, RP11-10C13.2, TRIP8

Location

Chromosome 10: 64,936,560-64,967,485 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 12 domains and features, is associated with 14171 variant alleles and maps to 462 oligo probes.

Gene

This transcript is a product of gene ENSG00000171988.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000399262.2	JMJD1C-001	8666	2540aa	ENSP00000382204.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41532	Q15652	NM_032776.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000399251.1	JMJD1C-201	8536	1480aa	ENSP00000382195.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q15652	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000402544.1	JMJD1C-202	8391	2303aa	ENSP00000384990.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44410	-	NM_004241.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000542921.1	JMJD1C-203	8149	2358aa	ENSP00000444682.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS60538	Q15652	NM_001282948.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000327520.7	JMJD1C-002	3781	956aa	ENSP00000335929.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000489372.2	JMJD1C-008	913	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000497922.1	JMJD1C-005	775	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000483298.1	JMJD1C-006	772	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000469152.1	JMJD1C-007	734	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490669.1	JMJD1C-004	518	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000467356.1	JMJD1C-003	1305	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 3,781 bps, Translation length: 956 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000327520.7

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000048250 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000327520.7 JMJD1C-002

Summary