Transcript: ENST00000474627.3 ATPAF2-001

Description

ATP synthase mitochondrial F1 complex assembly factor 2 [Source:HGNC Symbol;Acc:18802]

Gene Synonyms

ATP12, ATP12p, Atp12p, LP3663, MC5DN1, MGC29736

Location

Chromosome 17: 17,921,324-17,942,482 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 6 domains and features, is associated with 9152 variant alleles and maps to 410 oligo probes.

Gene

This transcript is a product of gene ENSG00000171953.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000474627.3	ATPAF2-001	1564	289aa	ENSP00000417190.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32585	C9J2Q2 Q8N5M1	NM_145691.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000444058.1	ATPAF2-015	685	205aa	ENSP00000397198.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J2Q2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000585101.1	ATPAF2-013	566	107aa	ENSP00000463861.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KTB2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000581698.1	ATPAF2-014	471	59aa	ENSP00000466008.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000462733.1	ATPAF2-003	1737	107aa	ENSP00000463920.1	Nonsense mediated decay		J3KTB2	-	-
ENST00000584205.1	ATPAF2-020	1298	107aa	ENSP00000462899.1	Nonsense mediated decay		J3KTB2	-	-
ENST00000469327.1	ATPAF2-008	681	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000577586.1	ATPAF2-012	551	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000496852.1	ATPAF2-004	1662	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000465337.2	ATPAF2-009	894	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000488753.1	ATPAF2-007	796	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000497871.1	ATPAF2-006	633	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000467560.1	ATPAF2-011	567	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 1,564 bps, Translation length: 289 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8N5M1

CCDS

This transcript is a member of the Human CCDS set: CCDS32585

Version

ENST00000474627.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000131934 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000474627.3 ATPAF2-001

Summary