Transcript: ENST00000584088.1 AQP4-004

Description

aquaporin 4 [Source:HGNC Symbol;Acc:637]

Gene Synonyms

HMIWC2, MIWC

Location

Chromosome 18: 24,440,655-24,442,370 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 791 variant alleles and maps to 144 oligo probes.

Gene

This transcript is a product of gene ENSG00000171885.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000383168.4	AQP4-001	5274	323aa	ENSP00000372654.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11889	B4DHF5 F1DSG4 P55087	NM_004028.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000581374.1	AQP4-003	1586	301aa	ENSP00000462597.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58617	P55087	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000440832.3	AQP4-005	1169	301aa	ENSP00000393121.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58617	P55087	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000578776.1	AQP4-002	575	185aa	ENSP00000462075.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KRM4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000383170.3	AQP4-008	567	98aa	ENSP00000372656.3	Nonsense mediated decay		H0Y3H5	-	-
ENST00000583022.1	AQP4-006	606	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000584088.1	AQP4-004	552	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 552 bps,

Version

ENST00000584088.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000446533 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000584088.1 AQP4-004

Summary