Transcript: ENST00000448925.1 TTC40-002

Description

tetratricopeptide repeat domain 40 [Source:HGNC Symbol;Acc:25247]

Gene Synonyms

C10orf123, C10orf124, C10orf92, C10orf93, DKFZp434A1721, FLJ25954, RP13-137A17.3, bA288G11.4, bA288G11.5, bB137A17.2, bB137A17.3

Location

Chromosome 10: 134,646,120-134,648,857 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 2 domains and features, is associated with 1472 variant alleles and maps to 121 oligo probes.

Gene

This transcript is a product of gene ENSG00000171811.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000368586.5	TTC40-001	8278	2715aa	ENSP00000357575.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58101	Q8IYW2	NM_001200049.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000368582.2	TTC40-202	4694	1530aa	ENSP00000357571.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QTL0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000263170.5	TTC40-201	2745	876aa	ENSP00000263170.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000368585.3	TTC40-008	1825	405aa	ENSP00000357574.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8IYW2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000448925.1	TTC40-002	610	153aa	ENSP00000417039.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000486104.1	TTC40-006	1675	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000475340.1	TTC40-009	1156	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000466834.1	TTC40-005	573	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000476633.1	TTC40-007	563	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000417862.2	TTC40-004	394	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 610 bps, Translation length: 153 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000448925.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000051083 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000448925.1 TTC40-002

Summary