Transcript: ENST00000381538.3 NFXL1-001

Description

nuclear transcription factor, X-box binding-like 1 [Source:HGNC Symbol;Acc:18726]

Gene Synonyms

CDZFP, HOZFP, OZFP, URCC5

Location

Chromosome 4: 47,849,257-47,916,633 reverse strand.

About this transcript

This transcript has 23 exons, is annotated with 25 domains and features, is associated with 27595 variant alleles and maps to 589 oligo probes.

Gene

This transcript is a product of gene ENSG00000170448.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000507489.1	NFXL1-002	3833	911aa	ENSP00000422037.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3478	Q6ZNB6	NM_001278624.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000381538.3	NFXL1-001	3728	911aa	ENSP00000370949.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3478	Q6ZNB6	NM_152995.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000329043.3	NFXL1-201	2271	733aa	ENSP00000333113.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6ZNB6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000464756.2	NFXL1-003	3865	733aa	ENSP00000425812.1	Nonsense mediated decay		Q6ZNB6	-	-
ENST00000507131.1	NFXL1-004	2664	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000502448.1	NFXL1-008	1760	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000508115.1	NFXL1-007	654	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000511452.1	NFXL1-005	419	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 23, Coding exons: 22, Transcript length: 3,728 bps, Translation length: 911 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6ZNB6

CCDS

This transcript is a member of the Human CCDS set: CCDS3478

Version

ENST00000381538.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000250489 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000381538.3 NFXL1-001

Summary