Transcript: ENST00000427262.1 SEMA3E-002

Description

sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E [Source:HGNC Symbol;Acc:10727]

Gene Synonyms

KIAA0331, M-SEMAH, M-SemaK, SEMAH, coll-5

Location

About this transcript

This transcript has 17 exons, is annotated with 15 domains and features, is associated with 124684 variant alleles and maps to 390 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000307792.3	SEMA3E-001	6476	775aa	ENSP00000303212.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34674	C9JVH5 F8WCZ5 O15041	NM_012431.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000427262.1	SEMA3E-002	2414	715aa	ENSP00000405052.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55121	C9JVH5 O15041	NM_001178129.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000442159.3	SEMA3E-004	626	163aa	ENSP00000412867.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JVH5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000453333.1	SEMA3E-003	571	39aa	ENSP00000415184.1	Nonsense mediated decay		F8WCZ5	-	-

Summary

Statistics

Exons: 17, Coding exons: 16, Transcript length: 2,414 bps, Translation length: 715 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O15041

CCDS

This transcript is a member of the Human CCDS set: CCDS55121

Version

ENST00000427262.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000336607 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.