Transcript: ENST00000358181.4 CHD3-002

Description

chromodomain helicase DNA binding protein 3 [Source:HGNC Symbol;Acc:1918]

Gene Synonyms

Mi-2a, Mi2-ALPHA, ZFH

Location

Chromosome 17: 7,792,109-7,816,078 forward strand.

About this transcript

This transcript has 39 exons, is annotated with 63 domains and features, is associated with 11166 variant alleles and maps to 1065 oligo probes.

Gene

This transcript is a product of gene ENSG00000170004.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000380358.4	CHD3-003	7356	2059aa	ENSP00000369716.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32553	Q12873 Q2TAZ1	NM_001005271.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000330494.7	CHD3-001	7328	2000aa	ENSP00000332628.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32554	Q12873 Q2TAZ1	NM_001005273.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000358181.4	CHD3-002	7286	1966aa	ENSP00000350907.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32555	Q12873	NM_005852.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000452447.1	CHD3-006	1573	525aa	ENSP00000405861.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000439235.1	CHD3-010	1263	383aa	ENSP00000395252.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C0J3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000449744.1	CHD3-011	880	277aa	ENSP00000411959.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C3H7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000573936.1	CHD3-016	749	249aa	ENSP00000459321.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L229	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000571249.1	CHD3-015	330	110aa	ENSP00000458861.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000470531.1	CHD3-004	3744	63aa	ENSP00000467547.1	Nonsense mediated decay		K7EPV1	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000570758.1	CHD3-013	174	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000574022.1	CHD3-012	103	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000481999.1	CHD3-005	2515	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000572579.1	CHD3-014	931	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000572750.1	CHD3-017	750	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000466233.1	CHD3-008	648	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000473376.1	CHD3-009	562	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000479080.1	CHD3-007	519	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 39, Coding exons: 39, Transcript length: 7,286 bps, Translation length: 1,966 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q12873

CCDS

This transcript is a member of the Human CCDS set: CCDS32555

Version

ENST00000358181.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000318051 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000358181.4 CHD3-002

Summary