Transcript: ENST00000484514.1 ROBO1-006

Description

roundabout, axon guidance receptor, homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:10249]

Gene Synonyms

DUTT1, FLJ21882, SAX3

Location

Chromosome 3: 78,709,089-78,764,407 reverse strand.

About this transcript

This transcript has 10 exons, is associated with 26467 variant alleles and maps to 234 oligo probes.

Gene

This transcript is a product of gene ENSG00000169855.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000436010.2	ROBO1-201	7510	1612aa	ENSP00000406043.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9Y6N7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000464233.1	ROBO1-001	6742	1651aa	ENSP00000420321.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54611	Q9Y6N7	NM_002941.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000495273.1	ROBO1-003	5600	1606aa	ENSP00000420637.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46872	Q2M1J3 Q9Y6N7	NM_133631.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000467549.1	ROBO1-005	4841	1551aa	ENSP00000417992.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54610	Q9Y6N7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000495961.1	ROBO1-010	577	192aa	ENSP00000418553.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C4Y7	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000472273.1	ROBO1-007	569	190aa	ENSP00000418946.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000492990.1	ROBO1-011	444	41aa	ENSP00000419915.1	Nonsense mediated decay		F8WEV8	-	-
ENST00000466906.1	ROBO1-009	550	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000498428.1	ROBO1-004	3566	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000484514.1	ROBO1-006	3236	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000488735.1	ROBO1-012	593	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 0, Transcript length: 3,236 bps,

Version

ENST00000484514.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000352614 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000484514.1 ROBO1-006

Summary