Transcript: ENST00000361589.4 NLGN1-002

Description

neuroligin 1 [Source:HGNC Symbol;Acc:14291]

Gene Synonyms

KIAA1070, NL1, NLGN1

Location

Chromosome 3: 173,302,345-174,000,913 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 17 domains and features, is associated with 299852 variant alleles and maps to 442 oligo probes.

Gene

This transcript is a product of gene ENSG00000169760.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000457714.1	NLGN1-001	8242	823aa	ENSP00000392500.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3222	Q8N2Q7	NM_014932.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000361589.4	NLGN1-002	5092	823aa	ENSP00000354541.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3222	Q8N2Q7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000545397.1	NLGN1-202	2719	823aa	ENSP00000441108.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3222	Q8N2Q7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000401917.3	NLGN1-201	2592	863aa	ENSP00000385750.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J4D3 D2X2H5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000415045.1	NLGN1-003	1536	367aa	ENSP00000410374.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J4D3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000423427.1	NLGN1-005	771	13aa	ENSP00000407255.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000413821.1	NLGN1-007	635	10aa	ENSP00000401843.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000466350.1	NLGN1-010	861	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000482120.1	NLGN1-009	570	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000469727.1	NLGN1-006	561	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000469564.1	NLGN1-011	551	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490929.1	NLGN1-008	432	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 5,092 bps, Translation length: 823 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8N2Q7

CCDS

This transcript is a member of the Human CCDS set: CCDS3222

Version

ENST00000361589.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000347055 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000361589.4 NLGN1-002

Summary