Transcript: ENST00000359479.3 SLC33A1-001

Description

solute carrier family 33 (acetyl-CoA transporter), member 1 [Source:HGNC Symbol;Acc:95]

Gene Synonyms

ACATN, AT-1, AT1, CCHLND, SPG42

Location

About this transcript

This transcript has 7 exons, is annotated with 21 domains and features, is associated with 12370 variant alleles and maps to 340 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000392845.3	SLC33A1-002	9217	549aa	ENSP00000376587.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3173	O00400	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000359479.3	SLC33A1-001	2404	549aa	ENSP00000352456.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3173	O00400	NM_004733.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000475842.1	SLC33A1-003	1060	269aa	ENSP00000419066.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000496772.1	SLC33A1-006	555	185aa	ENSP00000419165.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C577	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000468581.1	SLC33A1-005	764	109aa	ENSP00000418847.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000460729.1	SLC33A1-004	499	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 2,404 bps, Translation length: 549 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O00400

CCDS

This transcript is a member of the Human CCDS set: CCDS3173

Version

ENST00000359479.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000351129 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.