Transcript: ENST00000428962.2 THBS3-010

Description

thrombospondin 3 [Source:HGNC Symbol;Acc:11787]

Gene Synonyms

TSP3

Location

Chromosome 1: 155,167,688-155,177,690 reverse strand.

About this transcript

This transcript has 15 exons, is annotated with 27 domains and features, is associated with 4670 variant alleles and maps to 378 oligo probes.

Gene

This transcript is a product of gene ENSG00000169231.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000368378.3	THBS3-001	3145	956aa	ENSP00000357362.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1099	B3KQE1 F5H4Z8 P49746 Q2HIZ1	NM_007112.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000541990.1	THBS3-202	2928	485aa	ENSP00000437353.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H4Z8 Q2HIZ1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000457183.2	THBS3-009	2727	836aa	ENSP00000392207.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58034	F5H4Z8 P49746 Q2HIZ1	NM_001252608.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000541576.1	THBS3-201	1878	353aa	ENSP00000444792.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H4Z8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000428962.2	THBS3-010	1833	400aa	ENSP00000404040.2	Nonsense mediated decay		B4DQH6	-	-
ENST00000486260.1	THBS3-007	1763	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000460050.1	THBS3-006	879	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000465596.1	THBS3-005	489	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000496332.1	THBS3-008	839	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000469769.1	THBS3-004	777	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000498500.1	THBS3-003	768	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 15, Coding exons: 11, Transcript length: 1,833 bps, Translation length: 400 residues

Version

ENST00000428962.2

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000471532 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000428962.2 THBS3-010

Summary