Transcript: ENST00000396578.3 COL4A3-001

Description

collagen, type IV, alpha 3 (Goodpasture antigen) [Source:HGNC Symbol;Acc:2204]

Location

About this transcript

This transcript has 52 exons, is annotated with 61 domains and features, is associated with 66994 variant alleles and maps to 1520 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000396578.3	COL4A3-001	8097	1670aa	ENSP00000379823.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42829	A9QVI3 Q01955 Q548X1	NM_000091.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000304990.8	COL4A3-004	910	156aa	ENSP00000302781.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7BXM4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000468753.1	COL4A3-005	660	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000469504.1	COL4A3-002	521	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000471862.1	COL4A3-006	755	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000487633.1	COL4A3-003	524	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 52, Coding exons: 52, Transcript length: 8,097 bps, Translation length: 1,670 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q01955

CCDS

This transcript is a member of the Human CCDS set: CCDS42829

Version

ENST00000396578.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000331409 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.