Transcript: ENST00000478254.1 GFM1-003

Description

G elongation factor, mitochondrial 1 [Source:HGNC Symbol;Acc:13780]

Gene Synonyms

COXPD1, EFG, EFG1, EFGM, EGF1, GFM, hEFG1

Location

Chromosome 3: 158,362,317-158,410,361 forward strand.

About this transcript

This transcript has 18 exons, is annotated with 17 domains and features, is associated with 20517 variant alleles and maps to 692 oligo probes.

Gene

This transcript is a product of gene ENSG00000168827.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000486715.1	GFM1-001	3721	751aa	ENSP00000419038.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33885	C9JA25 E5KND5 Q96RP9	NM_024996.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000264263.5	GFM1-004	3453	770aa	ENSP00000264263.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JA25 Q96RP9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000478576.1	GFM1-002	2147	591aa	ENSP00000418755.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9IZ01 C9JA25	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000472383.1	GFM1-010	656	17aa	ENSP00000420272.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000464732.1	GFM1-007	502	60aa	ENSP00000417532.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JA25	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000478254.1	GFM1-003	3470	453aa	ENSP00000417225.1	Nonsense mediated decay		C9JA25 F8WAU4	-	-
ENST00000490261.1	GFM1-008	591	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000478251.1	GFM1-005	2040	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000312756.4	GFM1-006	2006	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000481468.1	GFM1-009	842	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000477721.1	GFM1-011	739	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 18, Coding exons: 11, Transcript length: 3,470 bps, Translation length: 453 residues

Version

ENST00000478254.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000352273 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000478254.1 GFM1-003

Summary