Transcript: ENST00000467747.1 SEMA4C-003

Description

sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C [Source:HGNC Symbol;Acc:10731]

Gene Synonyms

KIAA1739, M-SEMA-F, SEMACL1, SEMAF, SEMAI, Semacl1, Semaf

Location

About this transcript

This transcript has 3 exons, is associated with 2119 variant alleles and maps to 316 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000305476.5	SEMA4C-001	3545	833aa	ENSP00000306844.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2029	C9J4M7 C9JV89 Q53RE7 Q6P5A5 Q8NBN9 Q9C0C4	NM_017789.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000449330.1	SEMA4C-005	839	139aa	ENSP00000391094.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J4M7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000442264.1	SEMA4C-006	817	201aa	ENSP00000393498.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J4M7 C9JV89	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000482925.1	SEMA4C-002	3776	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000467747.1	SEMA4C-003	3371	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000474420.1	SEMA4C-004	2625	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 3,371 bps,

Version

ENST00000467747.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000339509 (version 1)