Transcript: ENST00000305476.5 SEMA4C-001

Description

sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C [Source:HGNC Symbol;Acc:10731]

Gene Synonyms

KIAA1739, M-SEMA-F, SEMACL1, SEMAF, SEMAI, Semacl1, Semaf

Location

About this transcript

This transcript has 15 exons, is annotated with 20 domains and features, is associated with 5532 variant alleles and maps to 602 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000305476.5	SEMA4C-001	3545	833aa	ENSP00000306844.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2029	C9J4M7 C9JV89 Q53RE7 Q6P5A5 Q8NBN9 Q9C0C4	NM_017789.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000449330.1	SEMA4C-005	839	139aa	ENSP00000391094.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J4M7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000442264.1	SEMA4C-006	817	201aa	ENSP00000393498.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J4M7 C9JV89	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000482925.1	SEMA4C-002	3776	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000467747.1	SEMA4C-003	3371	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000474420.1	SEMA4C-004	2625	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 15, Coding exons: 14, Transcript length: 3,545 bps, Translation length: 833 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9C0C4

CCDS

This transcript is a member of the Human CCDS set: CCDS2029

Version

ENST00000305476.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000252957 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.